Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii
Identifieur interne : 000658 ( Main/Exploration ); précédent : 000657; suivant : 000659Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii
Auteurs : Konstantinos Mavromatis [États-Unis] ; Natalia Ivanova [États-Unis] ; Iain Anderson [États-Unis] ; Athanasios Lykidis [États-Unis] ; Sean D. Hooper [États-Unis] ; Hui Sun [États-Unis] ; Victor Kunin [États-Unis] ; Alla Lapidus [États-Unis] ; Philip Hugenholtz [États-Unis] ; Bharat Patel [Australie] ; Nikos C. Kyrpides [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2009.
Abstract
Url:
DOI: 10.1371/journal.pone.0004192
PubMed: 19145256
PubMed Central: 2626281
Affiliations:
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Hooper</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Sun, Hui" sort="Sun, Hui" uniqKey="Sun H" first="Hui" last="Sun">Hui Sun</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Kunin, Victor" sort="Kunin, Victor" uniqKey="Kunin V" first="Victor" last="Kunin">Victor Kunin</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Lapidus, Alla" sort="Lapidus, Alla" uniqKey="Lapidus A" first="Alla" last="Lapidus">Alla Lapidus</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Hugenholtz, Philip" sort="Hugenholtz, Philip" uniqKey="Hugenholtz P" first="Philip" last="Hugenholtz">Philip Hugenholtz</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Patel, Bharat" sort="Patel, Bharat" uniqKey="Patel B" first="Bharat" last="Patel">Bharat Patel</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Microbial Gene Research and Resources Facility, School of Biomolecular and Physical Sciences, Griffith University, Brisbane, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Microbial Gene Research and Resources Facility, School of Biomolecular and Physical Sciences, Griffith University, Brisbane</wicri:regionArea><wicri:noRegion>Brisbane</wicri:noRegion></affiliation></author><author><name sortKey="Kyrpides, Nikos C" sort="Kyrpides, Nikos C" uniqKey="Kyrpides N" first="Nikos C." last="Kyrpides">Nikos C. Kyrpides</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>DOE- Joint Genome Institute, Walnut Creek, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE- Joint Genome Institute, Walnut Creek, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2009">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Halothermothirx orenii</italic> is a strictly anaerobic thermohalophilic bacterium isolated from sediment of a Tunisian salt lake. It belongs to the order Halanaerobiales in the phylum Firmicutes. The complete sequence revealed that the genome consists of one circular chromosome of 2578146 bps encoding 2451 predicted genes. This is the first genome sequence of an organism belonging to the Haloanaerobiales. Features of both Gram positive and Gram negative bacteria were identified with the presence of both a sporulating mechanism typical of Firmicutes and a characteristic Gram negative lipopolysaccharide being the most prominent. Protein sequence analyses and metabolic reconstruction reveal a unique combination of strategies for thermophilic and halophilic adaptation. <italic>H. orenii</italic> can serve as a model organism for the study of the evolution of the Gram negative phenotype as well as the adaptation under thermohalophilic conditions and the development of biotechnological applications under conditions that require high temperatures and high salt concentrations.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Australie</li><li>États-Unis</li></country><region><li>Californie</li></region></list><tree><country name="États-Unis"><region name="Californie"><name sortKey="Mavromatis, Konstantinos" sort="Mavromatis, Konstantinos" uniqKey="Mavromatis K" first="Konstantinos" last="Mavromatis">Konstantinos Mavromatis</name></region><name sortKey="Anderson, Iain" sort="Anderson, Iain" uniqKey="Anderson I" first="Iain" last="Anderson">Iain Anderson</name><name sortKey="Hooper, Sean D" sort="Hooper, Sean D" uniqKey="Hooper S" first="Sean D." last="Hooper">Sean D. Hooper</name><name sortKey="Hugenholtz, Philip" sort="Hugenholtz, Philip" uniqKey="Hugenholtz P" first="Philip" last="Hugenholtz">Philip Hugenholtz</name><name sortKey="Ivanova, Natalia" sort="Ivanova, Natalia" uniqKey="Ivanova N" first="Natalia" last="Ivanova">Natalia Ivanova</name><name sortKey="Kunin, Victor" sort="Kunin, Victor" uniqKey="Kunin V" first="Victor" last="Kunin">Victor Kunin</name><name sortKey="Kyrpides, Nikos C" sort="Kyrpides, Nikos C" uniqKey="Kyrpides N" first="Nikos C." last="Kyrpides">Nikos C. Kyrpides</name><name sortKey="Lapidus, Alla" sort="Lapidus, Alla" uniqKey="Lapidus A" first="Alla" last="Lapidus">Alla Lapidus</name><name sortKey="Lykidis, Athanasios" sort="Lykidis, Athanasios" uniqKey="Lykidis A" first="Athanasios" last="Lykidis">Athanasios Lykidis</name><name sortKey="Sun, Hui" sort="Sun, Hui" uniqKey="Sun H" first="Hui" last="Sun">Hui Sun</name></country><country name="Australie"><noRegion><name sortKey="Patel, Bharat" sort="Patel, Bharat" uniqKey="Patel B" first="Bharat" last="Patel">Bharat Patel</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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